CellAtlas Dataframe

Cell types and Volume information for each brain area

• Refer to API: neuralib.atlas.cellatlas

See also

• Blue Brain Cell Atlas

• Rodarie D et al., (2022)

Example of loading the dataframe

from neuralib.atlas.cellatlas import load_cellatlas

df = load_cellatlas()
print(df)

output

┌────────────────────────────────┬────────────────┬───────────┬─────────┐
│ name                           ┆ Volumes [mm^3] ┆ n_neurons ┆ acronym │
│ ---                            ┆ ---            ┆ ---       ┆ ---     │
│ str                            ┆ f64            ┆ i64       ┆ str     │
╞════════════════════════════════╪════════════════╪═══════════╪═════════╡
│ Abducens nucleus               ┆ 0.015281       ┆ 1324      ┆ VI      │
│ Accessory facial motor nucleus ┆ 0.013453       ┆ 497       ┆ ACVII   │
│ Accessory olfactory bulb       ┆ 0.6880625      ┆ 189608    ┆ AOB     │
│ Accessory supraoptic group     ┆ 0.0013125      ┆ 148       ┆ ASO     │
│ Agranular insular area         ┆ 4.901734       ┆ 242362    ┆ AI      │
│ …                              ┆ …              ┆ …         ┆ …       │
│ Vestibular nuclei              ┆ 2.5563125      ┆ 87832     ┆ VNC     │
│ Visceral area                  ┆ 1.764797       ┆ 108294    ┆ VISC    │
│ Visual areas                   ┆ 12.957203      ┆ 1297194   ┆ VIS     │
│ Zona incerta                   ┆ 2.157641       ┆ 136765    ┆ ZI      │
│ posteromedial visual area      ┆ 1.2225625      ┆ 197643    ┆ VISpm   │
└────────────────────────────────┴────────────────┴───────────┴─────────┘