neuralib.atlas.util.iter_source_coordinates

neuralib.atlas.util.iter_source_coordinates(file, *, area=None, source=None, region_col=None, hemisphere='both', to_brainrender=True, source_order=None, inverse_hemisphere=False)[source]

Load allen ccf roi output (merged different color channels).

Parameters:

  • file (Path) – parsed csv file after

  • area (list[str] | str | None) – only show rois in region(s)

  • source (list[str] | str | None) – only show rois from source(s)

  • region_col (str | None) – if None, auto infer, and check the lowest merge level contain all the regions specified

  • hemisphere (Literal['ipsi', 'contra', 'both']) – which brain hemisphere

  • to_brainrender (bool) – convert the coordinates to brain render

  • source_order (tuple[str, ...] | None) – whether specify the source generator order

  • inverse_hemisphere (bool) – if True, then inverse ML coordinates. default is False.

Returns:

Iterable of SourceCoordinates

Return type:

Iterable[SourceCoordinates]