neuralib.facemap.core.SVDVariables

class neuralib.facemap.core.SVDVariables[source]

Bases: TypedDict

SVD output from facemap .. seealso:: http://facemap.readthedocs.io/en/stable/outputs.html#roi-and-svd-processing

__init__(*args, **kwargs)

Methods

__init__(*args, **kwargs)

clear()

copy()

fromkeys(iterable[, value])

Create a new dictionary with keys from iterable and values set to value.

get(key[, default])

Return the value for key if key is in the dictionary, else default.

items()

keys()

pop(k[,d])

If the key is not found, return the default if given; otherwise, raise a KeyError.

popitem()

Remove and return a (key, value) pair as a 2-tuple.

setdefault(key[, default])

Insert key with a value of default if key is not in the dictionary.

update([E, ]**F)

If E is present and has a .keys() method, then does: for k in E: D[k] = E[k] If E is present and lacks a .keys() method, then does: for k, v in E: D[k] = v In either case, this is followed by: for k in F: D[k] = F[k]

values()

Attributes

filenames

save_path

Ly

Lx

sbin

fullSVD

save_mat

Lybin

Lxbin

sybin

sxbin

LYbin

LXbin

avgframe

avgmotion

avgframe_reshape

avgmotion_reshape

motion

motSv

movSv

motMask

movMask

motMask_reshape

movMask_reshape

motSVD

movSVD

pupil

running

blink

rois

sy

sx

filenames: list[str]
save_path: str
Ly: list[int]
Lx: list[int]
sbin: int
fullSVD: bool
save_mat: bool
Lybin: ndarray
Lxbin: ndarray
sybin: ndarray
sxbin: ndarray
LYbin: int
LXbin: int
avgframe: list[ndarray]
avgmotion: list[ndarray]
avgframe_reshape: ndarray
avgmotion_reshape: ndarray
motion: list[ndarray]
motSv: list[ndarray]
movSv: list[ndarray]
motMask: list[int]
movMask: list[int]
motMask_reshape: list[int]
movMask_reshape: list[int]
motSVD: list[ndarray]
movSVD: list[ndarray]
pupil: list[PupilDict]
running: list[ndarray]
rois: list[RoiDict]
sy: ndarray
sx: ndarray