neuralib.widefield.align.NapariAlignmentOptions

class neuralib.widefield.align.NapariAlignmentOptions

Bases: AbstractParser

__init__()

Methods

__init__()
main([args, parse_only, system_exit])	parsing the commandline input args and call run().
new_parser(**kwargs)	create an ArgumentParser.
run()	called after main().

Attributes

DESCRIPTION	parser description.
EPILOG	parser epilog.
USAGE	parser usage.
color	alignment map with color (default: False)
dorsal_map_path	dorsal map file, If None then use default (default: None)
reference_path	reference image (e.g., bright-field) (default: None)
sequence_path	file path for the video sequence

DESCRIPTION: str | None = 'View the video sequences and top view of dorsal cortex using napari'

parser description. Could be override as a method if its content is dynamic-generated.

sequence_path: str

file path for the video sequence

reference_path: str | None

reference image (e.g., bright-field) (default: None)

dorsal_map_path: str | None

dorsal map file, If None then use default (default: None)

color: bool

alignment map with color (default: False)

run()

called after main(). Used for runs the main execution logic of the object